Detailed information of SNP:
|
SNP ID:
sf0322387088(Gbrowse)
Chromosome: chr03 Position: 22387088 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 69.66% | 30.34% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 479 | 18.37% | 81.63% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 321 | 16.82% | 83.18% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 66 | 36.36% | 63.64% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322387088 | T->C | INTERGENIC | None |