Detailed information of SNP:
|
SNP ID:
sf0322411080(Gbrowse)
Chromosome: chr03 Position: 22411080 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 94.03% | 5.97% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 486 | 85.39% | 14.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 90.12% | 9.88% |
| Tropical Japonica | 87 | 79.31% | 20.69% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322411080 | G->A | INTERGENIC | None |