Detailed information of SNP:
|
SNP ID:
sf0322428486(Gbrowse)
Chromosome: chr03 Position: 22428486 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 64.50% | 35.50% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 496 | 6.85% | 93.15% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 3 | 33.33% | 66.67% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322428486 | T->C | INTERGENIC | None |