Detailed information of SNP:
|
SNP ID:
sf0322430157(Gbrowse)
Chromosome: chr03 Position: 22430157 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.50% | 35.50% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322430157 | T->C | LOC_Os03g40360(LOC_Os03g40360.1) | INTRON |