Detailed information of SNP:
|
SNP ID:
sf0322437218(Gbrowse)
Chromosome: chr03 Position: 22437218 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1274 | 97.10% | 2.90% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 359 | 89.97% | 10.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 237 | 88.19% | 11.81% |
| Tropical Japonica | 70 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 84.62% | 15.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322437218 | A->T | INTERGENIC | None |