Detailed information of SNP:
|
SNP ID:
sf0322443063(Gbrowse)
Chromosome: chr03 Position: 22443063 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1352 | 59.91% | 40.09% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 19 | 73.68% | 26.32% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 3 | 66.67% | 33.33% |
| Intermediate | 35 | 51.43% | 48.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322443063 | C->T | LOC_Os03g40390(LOC_Os03g40390.1) | Synonymous |