Detailed information of SNP:
|
SNP ID:
sf0322459562(Gbrowse)
Chromosome: chr03 Position: 22459562 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 57.15% | 42.85% |
| All Indica | 792 | 87.63% | 12.37% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 369 | 86.18% | 13.82% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322459562 | T->C | INTERGENIC | None |