Detailed information of SNP:
|
SNP ID:
sf0322466731(Gbrowse)
Chromosome: chr03 Position: 22466731 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1207 | 94.12% | 5.88% |
| All Indica | 594 | 88.89% | 11.11% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 279 | 91.40% | 8.60% |
| Indica II | 159 | 85.53% | 14.47% |
| Indica Intermediate | 156 | 87.82% | 12.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322466731 | A->G | LOC_Os03g40440(LOC_Os03g40440.1) | INTRON |