Detailed information of SNP:
|
SNP ID:
sf0322466926(Gbrowse)
Chromosome: chr03 Position: 22466926 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 89.93% | 10.07% |
| All Indica | 760 | 82.11% | 17.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 70.03% | 29.97% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 200 | 88.00% | 12.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322466926 | C->T | LOC_Os03g40440(LOC_Os03g40440.1) | INTRON |