Detailed information of SNP:
|
SNP ID:
sf0322531167(Gbrowse)
Chromosome: chr03 Position: 22531167 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 71.52% | 28.48% |
| All Indica | 795 | 52.33% | 47.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 40.80% | 59.20% |
| Indica II | 211 | 70.62% | 29.38% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322531167 | A->T | INTERGENIC | None |