Detailed information of SNP:
|
SNP ID:
sf0322532317(Gbrowse)
Chromosome: chr03 Position: 22532317 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 95.44% | 4.56% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 418 | 87.08% | 12.92% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 279 | 100.00% | 0.00% |
| Tropical Japonica | 81 | 40.74% | 59.26% |
| Japonica Intermediate | 58 | 89.66% | 10.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322532317 | C->T | INTERGENIC | None |