Detailed information of SNP:
|
SNP ID:
sf0322554382(Gbrowse)
Chromosome: chr03 Position: 22554382 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 90.32% | 9.68% |
| All Indica | 743 | 83.04% | 16.96% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 178 | 55.62% | 44.38% |
| Indica Intermediate | 194 | 80.41% | 19.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322554382 | C->G | LOC_Os03g40560(LOC_Os03g40560.1) | INTRON |