Detailed information of SNP:
|
SNP ID:
sf0322555422(Gbrowse)
Chromosome: chr03 Position: 22555422 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 57.69% | 42.31% |
| All Indica | 784 | 34.44% | 65.56% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 365 | 47.12% | 52.88% |
| Indica II | 211 | 19.91% | 80.09% |
| Indica Intermediate | 208 | 26.92% | 73.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322555422 | T->C | LOC_Os03g40560(LOC_Os03g40560.1) | INTRON |