Detailed information of SNP:
|
SNP ID:
sf0322558618(Gbrowse)
Chromosome: chr03 Position: 22558618 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 76.62% | 23.38% |
| All Indica | 787 | 60.48% | 39.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 370 | 48.92% | 51.08% |
| Indica II | 210 | 79.05% | 20.95% |
| Indica Intermediate | 207 | 62.32% | 37.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322558618 | C->T | LOC_Os03g40570(LOC_Os03g40570.1) | SNPs that introduce stop codons |