Detailed information of SNP:
|
SNP ID:
sf0322562396(Gbrowse)
Chromosome: chr03 Position: 22562396 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 86.85% | 13.15% |
| All Indica | 692 | 77.46% | 22.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 307 | 71.99% | 28.01% |
| Indica II | 200 | 88.50% | 11.50% |
| Indica Intermediate | 185 | 74.59% | 25.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322562396 | C->T | LOC_Os03g40580(LOC_Os03g40580.1) | Non-Synonymous SNP |