Detailed information of SNP:
|
SNP ID:
sf0322564461(Gbrowse)
Chromosome: chr03 Position: 22564461 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 59.53% | 40.47% |
| All Indica | 797 | 94.60% | 5.40% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322564461 | T->C | INTERGENIC | None |