Detailed information of SNP:
|
SNP ID:
sf0322576069(Gbrowse)
Chromosome: chr03 Position: 22576069 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 79.41% | 20.59% |
| All Indica | 799 | 71.09% | 28.91% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322576069 | G->A | INTERGENIC | None |