Detailed information of SNP:
|
SNP ID:
sf0322676459(Gbrowse)
Chromosome: chr03 Position: 22676459 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 51.76% | 48.24% |
| All Indica | 798 | 25.06% | 74.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 2.93% | 97.07% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322676459 | T->C | INTERGENIC | None |