Detailed information of SNP:
|
SNP ID:
sf0322717153(Gbrowse)
Chromosome: chr03 Position: 22717153 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.58% | 45.42% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322717153 | C->T | INTERGENIC | None |