Detailed information of SNP:
|
SNP ID:
sf0322720372(Gbrowse)
Chromosome: chr03 Position: 22720372 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 89.22% | 10.78% |
| All Indica | 717 | 80.61% | 19.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 85.51% | 14.49% |
| Indica II | 174 | 67.24% | 32.76% |
| Indica Intermediate | 191 | 83.77% | 16.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322720372 | C->T | INTERGENIC | None |