Detailed information of SNP:
|
SNP ID:
sf0322731114(Gbrowse)
Chromosome: chr03 Position: 22731114 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1352 | 74.33% | 25.67% |
| All Indica | 737 | 54.95% | 45.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 350 | 46.29% | 53.71% |
| Indica II | 197 | 64.47% | 35.53% |
| Indica Intermediate | 190 | 61.05% | 38.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322731114 | A->G | LOC_Os03g40880(LOC_Os03g40880.1) | INTRON |