Detailed information of SNP:
|
SNP ID:
sf0322882367(Gbrowse)
Chromosome: chr03 Position: 22882367 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 78.56% | 21.44% |
| All Indica | 798 | 70.05% | 29.95% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 55.35% | 44.65% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322882367 | T->C | INTERGENIC | None |