Detailed information of SNP:
|
SNP ID:
sf0322899765(Gbrowse)
Chromosome: chr03 Position: 22899765 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 57.00% | 43.00% |
| All Indica | 770 | 31.56% | 68.44% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 21.54% | 78.46% |
| Indica I | 361 | 38.50% | 61.50% |
| Indica II | 204 | 20.10% | 79.90% |
| Indica Intermediate | 205 | 30.73% | 69.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322899765 | G->A | LOC_Os03g41180(LOC_Os03g41180.1) | Non-Synonymous SNP |