Detailed information of SNP:
|
SNP ID:
sf0322964922(Gbrowse)
Chromosome: chr03 Position: 22964922 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.78% | 44.22% |
| All Indica | 798 | 95.49% | 4.51% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322964922 | G->A | LOC_Os03g41300(LOC_Os03g41300.1) | INTRON |