Detailed information of SNP:
|
SNP ID:
sf0322973555(Gbrowse)
Chromosome: chr03 Position: 22973555 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.06% | 45.94% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322973555 | T->G | INTERGENIC | None |