Detailed information of SNP:
|
SNP ID:
sf0323032296(Gbrowse)
Chromosome: chr03 Position: 23032296 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 67.95% | 32.05% |
| All Indica | 760 | 43.29% | 56.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 357 | 30.25% | 69.75% |
| Indica II | 206 | 61.65% | 38.35% |
| Indica Intermediate | 197 | 47.72% | 52.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323032296 | C->T | INTERGENIC | None |