Detailed information of SNP:
|
SNP ID:
sf0323045708(Gbrowse)
Chromosome: chr03 Position: 23045708 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 57.68% | 42.32% |
| All Indica | 797 | 28.61% | 71.39% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 46.67% | 53.33% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 209 | 20.57% | 79.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323045708 | C->A | INTERGENIC | None |