Detailed information of SNP:
|
SNP ID:
sf0323061768(Gbrowse)
Chromosome: chr03 Position: 23061768 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 81.16% | 18.84% |
| All Indica | 797 | 74.15% | 25.85% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 56.15% | 43.85% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323061768 | G->T | LOC_Os03g41438(LOC_Os03g41438.1) | INTRON |