Detailed information of SNP:
|
SNP ID:
sf0323079010(Gbrowse)
Chromosome: chr03 Position: 23079010 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1195 | 97.99% | 2.01% |
| All Indica | 624 | 96.63% | 3.37% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 25 | 92.00% | 8.00% |
| Indica I | 308 | 95.13% | 4.87% |
| Indica II | 155 | 96.77% | 3.23% |
| Indica Intermediate | 161 | 99.38% | 0.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323079010 | A->G | INTERGENIC | None |