Detailed information of SNP:
|
SNP ID:
sf0323084343(Gbrowse)
Chromosome: chr03 Position: 23084343 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1208 | 89.32% | 10.68% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 301 | 62.46% | 37.54% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 204 | 77.94% | 22.06% |
| Tropical Japonica | 57 | 15.79% | 84.21% |
| Japonica Intermediate | 40 | 50.00% | 50.00% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 32 | 81.25% | 18.75% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323084343 | G->A | INTERGENIC | None |