Detailed information of SNP:
|
SNP ID:
sf0323162899(Gbrowse)
Chromosome: chr03 Position: 23162899 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1270 | 69.61% | 30.39% |
| All Indica | 658 | 52.58% | 47.42% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 61 | 16.39% | 83.61% |
| Indica I | 309 | 63.43% | 36.57% |
| Indica II | 172 | 33.72% | 66.28% |
| Indica Intermediate | 177 | 51.98% | 48.02% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323162899 | T->C | INTERGENIC | None |