Detailed information of SNP:
|
SNP ID:
sf0323176063(Gbrowse)
Chromosome: chr03 Position: 23176063 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1293 | 79.35% | 20.65% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 379 | 35.62% | 64.38% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 256 | 46.88% | 53.12% |
| Tropical Japonica | 76 | 3.95% | 96.05% |
| Japonica Intermediate | 47 | 25.53% | 74.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 36 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323176063 | A->G | INTERGENIC | None |