Detailed information of SNP:



SNP ID: sf0323185265(Gbrowse)

Chromosome: chr03

Position: 23185265
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1417 95.84% 4.16%
All Indica799 99.62% 0.38%
All Japonica497 99.60% 0.40%
Aus65 20.00% 80.00%
Indica I375 99.47% 0.53%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0323185265 G->A LOC_Os03g41740(LOC_Os03g41740.1) INTRON