Detailed information of SNP:
SNP ID:
sf0323185265(Gbrowse)
Chromosome: chr03 Position: 23185265 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1417 | 95.84% | 4.16% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 65 | 20.00% | 80.00% |
Indica I | 375 | 99.47% | 0.53% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0323185265 | G->A | LOC_Os03g41740(LOC_Os03g41740.1) | INTRON |