Detailed information of SNP:
|
SNP ID:
sf0323472412(Gbrowse)
Chromosome: chr03 Position: 23472412 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 59.18% | 40.82% |
| All Indica | 792 | 30.43% | 69.57% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 372 | 41.13% | 58.87% |
| Indica II | 212 | 9.91% | 90.09% |
| Indica Intermediate | 208 | 32.21% | 67.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323472412 | C->T | LOC_Os03g42200(LOC_Os03g42200.1) | INTRON |