Detailed information of SNP:
|
SNP ID:
sf0323488427(Gbrowse)
Chromosome: chr03 Position: 23488427 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 90.29% | 9.71% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 407 | 73.71% | 26.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 276 | 88.41% | 11.59% |
| Tropical Japonica | 77 | 25.97% | 74.03% |
| Japonica Intermediate | 54 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323488427 | G->T | LOC_Os03g42220(LOC_Os03g42220.2) | Non-Synonymous SNP |
| sf0323488427 | G->T | LOC_Os03g42220(LOC_Os03g42220.3) | Non-Synonymous SNP |
| sf0323488427 | G->T | LOC_Os03g42220(LOC_Os03g42220.1) | Non-Synonymous SNP |