Detailed information of SNP:
|
SNP ID:
sf0323546979(Gbrowse)
Chromosome: chr03 Position: 23546979 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 59.28% | 40.72% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323546979 | G->A | INTERGENIC | None |