Detailed information of SNP:
|
SNP ID:
sf0323549325(Gbrowse)
Chromosome: chr03 Position: 23549325 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 97.37% | 2.63% |
| All Indica | 714 | 96.50% | 3.50% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 340 | 97.06% | 2.94% |
| Indica II | 186 | 98.39% | 1.61% |
| Indica Intermediate | 188 | 93.62% | 6.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323549325 | G->A | INTERGENIC | None |