Detailed information of SNP:
|
SNP ID:
sf0323553989(Gbrowse)
Chromosome: chr03 Position: 23553989 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1271 | 91.19% | 8.81% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 355 | 73.52% | 26.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 224 | 91.52% | 8.48% |
| Tropical Japonica | 81 | 29.63% | 70.37% |
| Japonica Intermediate | 50 | 64.00% | 36.00% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323553989 | T->C | LOC_Os03g42334(LOC_Os03g42334.1) | Synonymous |