Detailed information of SNP:
|
SNP ID:
sf0323586428(Gbrowse)
Chromosome: chr03 Position: 23586428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.64% | 44.36% |
| All Indica | 798 | 28.32% | 71.68% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 28.88% | 71.12% |
| Indica II | 213 | 26.76% | 73.24% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323586428 | C->T | INTERGENIC | None |