Detailed information of SNP:
|
SNP ID:
sf0323587872(Gbrowse)
Chromosome: chr03 Position: 23587872 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 84.08% | 15.92% |
| All Indica | 797 | 78.17% | 21.83% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 23.81% | 76.19% |
| Indica I | 373 | 76.68% | 23.32% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323587872 | C->T | INTERGENIC | None |