Detailed information of SNP:



SNP ID: sf0323587872(Gbrowse)

Chromosome: chr03

Position: 23587872
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1413 84.08% 15.92%
All Indica797 78.17% 21.83%
All Japonica497 100.00% 0.00%
Aus63 23.81% 76.19%
Indica I373 76.68% 23.32%
Indica II213 79.81% 20.19%
Indica Intermediate211 79.15% 20.85%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0323587872 C->T INTERGENIC None