Detailed information of SNP:
|
SNP ID:
sf0323601747(Gbrowse)
Chromosome: chr03 Position: 23601747 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.23% | 44.77% |
| All Indica | 796 | 24.37% | 75.63% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 25.13% | 74.87% |
| Indica II | 211 | 22.75% | 77.25% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323601747 | A->G | INTERGENIC | None |