Detailed information of SNP:
|
SNP ID:
sf0323603258(Gbrowse)
Chromosome: chr03 Position: 23603258 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.55% | 48.45% |
| All Indica | 798 | 24.81% | 75.19% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 26.13% | 73.87% |
| Indica II | 212 | 22.64% | 77.36% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323603258 | C->T | INTERGENIC | None |