Detailed information of SNP:
|
SNP ID:
sf0323620496(Gbrowse)
Chromosome: chr03 Position: 23620496 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 70.00% | 30.00% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 412 | 10.44% | 89.56% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 275 | 10.18% | 89.82% |
| Tropical Japonica | 82 | 10.98% | 89.02% |
| Japonica Intermediate | 55 | 10.91% | 89.09% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 31 | 77.42% | 22.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323620496 | A->G | INTERGENIC | None |