Detailed information of SNP:
|
SNP ID:
sf0323646447(Gbrowse)
Chromosome: chr03 Position: 23646447 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1353 | 92.68% | 7.32% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 432 | 79.17% | 20.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 280 | 77.14% | 22.86% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 58 | 63.79% | 36.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323646447 | T->C | LOC_Os03g42510(LOC_Os03g42510.1) | Synonymous |