Detailed information of SNP:
|
SNP ID:
sf0323663114(Gbrowse)
Chromosome: chr03 Position: 23663114 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 88.30% | 11.70% |
| All Indica | 799 | 86.23% | 13.77% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323663114 | G->T | LOC_Os03g42530(LOC_Os03g42530.1) | Non-Synonymous SNP |