Detailed information of SNP:
|
SNP ID:
sf0323671527(Gbrowse)
Chromosome: chr03 Position: 23671527 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 92.66% | 7.34% |
| All Indica | 770 | 87.53% | 12.47% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 353 | 84.70% | 15.30% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 206 | 84.47% | 15.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323671527 | C->T | LOC_Os03g42540(LOC_Os03g42540.1) | Non-Synonymous SNP |