Detailed information of SNP:
|
SNP ID:
sf0323776890(Gbrowse)
Chromosome: chr03 Position: 23776890 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1172 | 87.20% | 12.80% |
| All Indica | 560 | 73.57% | 26.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 213 | 54.46% | 45.54% |
| Indica II | 179 | 92.74% | 7.26% |
| Indica Intermediate | 168 | 77.38% | 22.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323776890 | G->A | INTERGENIC | None |