Detailed information of SNP:
|
SNP ID:
sf0323845369(Gbrowse)
Chromosome: chr03 Position: 23845369 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1294 | 86.55% | 13.45% |
| All Indica | 797 | 85.07% | 14.93% |
| All Japonica | 377 | 86.21% | 13.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 78.07% | 21.93% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 255 | 80.39% | 19.61% |
| Tropical Japonica | 67 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 96.36% | 3.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323845369 | G->A | INTERGENIC | None |