Detailed information of SNP:
|
SNP ID:
sf0323852212(Gbrowse)
Chromosome: chr03 Position: 23852212 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 81.30% | 18.70% |
| All Indica | 797 | 75.28% | 24.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 68.98% | 31.02% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323852212 | C->T | INTERGENIC | None |