Detailed information of SNP:
|
SNP ID:
sf0323867621(Gbrowse)
Chromosome: chr03 Position: 23867621 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 86.17% | 13.83% |
| All Indica | 788 | 76.52% | 23.48% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 370 | 69.46% | 30.54% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 206 | 79.13% | 20.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0323867621 | G->A | INTERGENIC | None |